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Topic: San Francisco Bay

Overview April 24, 2014

San Francisco Bay

The San Francisco Bay (Bay) drains water from 40 percent of California. This includes flows originating from the Sierra Nevada mountain range and the Sacramento and San Joaquin rivers that make their way down through Sacramento-San Joaquin Bay Delta through the Bay to the Pacific Ocean.

The Bay is the largest harbor on the U.S. Pacific Coast and covers about 400 square miles with an average depth of 14 feet. Its deepest point is 360 feet  at the Golden Gate.

Every year, more than 67 million tons of cargo pass through the Golden Gate. The Bay also supports commercial bait shrimp, herring and Dungeness crab fisheries.

The Bay is a vital estuary and a key link in the Pacific Flyway, and millions of waterfowl use the shallow portions of the bay as a refuge each year.

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Aquafornia news June 9, 2025 The Mercury News (San Jose, Calif.)

Richmond fined for sewage water releases into San Francisco Bay

Richmond agreed to pay a $336,000 fine after it was found to have released poorly treated sewage water into the San Francisco Bay for more than a year. Half of that money will go toward environmental education for children. Between July 31, 2022, and Dec. 31, 2023, inadequately treated wastewater was released 112 times from the Richmond Municipal Sewer District Water Pollution Control Plant at 601 Canal Blvd., the San Francisco Bay Regional Water District announced Friday. Each violation cost the city $3,000, according to a settlement agreement between the city and water district. Richmond’s water pollution control plant is responsible for reducing the amount of harmful chemicals and pollutants flushed down toilets and dumped in the drains of Richmond homes, businesses and industrial operations before flowing into the San Francisco Bay.

Other San Francisco Bay news:

  • USGS: News release: Using spectral imaging to map vital mudflat microbial life in San Francisco Bay
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Aquafornia news June 2, 2025 San Francisco Chronicle

These native California creatures are unusually well adapted for climate change

The tiny native oysters of San Francisco Bay managed to outlive the Gold Rush, bay-shore development and decades of punishing pollution. New research shows they have a fighting chance to survive global warming as well. … In recent years, extreme heat waves killed thousands of shellfish that inhabit the same type of intertidal zone, including mussels that were baked in their shells in both the Pacific Northwest and Northern California during low tide. Scientists involved with oyster restoration were really concerned when that happened, said Chela Zabin, ecologist at the Smithsonian Environmental Research Center and one of two dozen co-authors on the study. … The study, which was published last month and involved significant team effort in 26 locations up and down the West Coast, with funding from the nonprofit organization the Nature Conservancy, showed that native oysters thrive in a wide range of habitats. 

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Aquafornia news May 22, 2025 The Daily Journal (San Mateo, Calif.)

‘Forever chemicals’ found in San Francisco Bay fish

A new study from the San Francisco Estuary Institute shows concerning levels of “forever chemicals” — or per- and polyfluoroalkyl substances — in at least 10 fish species in the San Francisco Bay, with contamination levels particularly high in the southern region. PFAS chemicals are considered dangerous due to their near-ubiquity in food and everyday-use products, as well as their inability to break down easily in the body and environment. They have been linked to a variety of conditions and diseases, including some cancers and reproductive issues. Studies have shown elevated PFAS levels in freshwater fish, and even though saltwater fish tend to see lower amounts, Rebecca Sutton, managing senior scientist at the San Francisco Estuary Institute, said studying fish in bodies of water like the San Francisco Bay is still critical.

Other PFAS news:

  • KGO (San Francisco): New study of San Francisco Bay fish confirms concentrations of PFAS aka ‘forever chemicals’
  • Chemical and Engineering News: PFAS in local beer come from local water
  • Purdue University: News release: Purdue innovation takes aim at (PFAS) water contamination (in California), powered by industry partnership
  • Read more
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Aquafornia news May 21, 2025 California Water Association

News release: Water Affordability Framework

Across California, water utility managers, elected officials, and state regulators are working to address a critical challenge: funding essential water infrastructure investments that deliver public health through the provision of reliable water service, while minimizing customer rate impacts. To tackle this issue, the California Water Association (CWA) has developed the Water Affordability Framework to guide efforts in maintaining affordability and sustainability for the six million Californians our member utilities serve. … Over the next 5 years, CWA members plan to invest up to $5 billion in new water infrastructure projects, including pipeline replacements and meter upgrades. Our members remain committed to minimizing costs and exploring strategies to keep water service affordable, while navigating the financial implications of future regulations.

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Aquafornia news May 21, 2025 CalMatters

San Francisco Bay fish contain ‘forever chemicals’ that could harm anglers

Contaminants known as “forever chemicals” have been discovered in San Francisco Bay fish at levels that could pose a health threat to people who eat fish caught there, according to new research published today. Linked to an array of health conditions such as cancers, heart disease and pregnancy disorders, per- and polyfluoroalkyl substances resist breaking down in the environment. … Researchers from the San Francisco Estuary Institute found the chemicals in striped bass, largemouth bass, leopard shark, white croaker, white sturgeon and other fish collected between 2009 and 2019 throughout San Francisco Bay. Recreational and subsistence anglers catch striped bass and the other fish from boats, shores or piers, but they are not sold commercially. 

Other PFAS news:

  • KQED (San Francisco): Toxic catch: Bay Area communities at risk from PFAS in local fish​
  • Grist: The EPA is rolling back drinking water limits for 4 PFAS. Thousands more remain unregulated.
  • The National Law Review: EPA announces plans to revisit certain PFAS drinking water standards
  • U.S. News and World Report: Q&A: The water company trying to get rid of PFAS
  • The Guardian (London, U.K.): US (Colo.) oil firms pumping secret chemicals into ground and not fully reporting it
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Aquafornia news May 19, 2025 U.S. Geological Survey

Blog: Mapping mercury in San Francisco Bay

The Remote Sensing of Mercury Pollution in South San Francisco Bay project aims to create maps of multiple chemical forms—or “species”—of mercury across time and space, giving resource managers new tools to monitor water quality, especially after extreme storms. By combining satellite imagery, shipboard radiometry, and in-water sampling, researchers are building a time series of data on mercury species, including methylmercury, a particularly dangerous form that accumulates in fish and other wildlife. … Understanding where and when mercury levels spike is crucial to ecosystem health. This is especially important as climate-driven storms and floods become more frequent, churning up bottom sediments and releasing previously trapped mercury into the water column. 

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Aquafornia news May 9, 2025 Pleasanton Weekly

Residents in unincorporated neighborhood of Pleasanton left without water

Residents who live in the Remen Tract neighborhood — an unincorporated plot of land located within Pleasanton — have depended on temporary fire hoses connected to fire hydrants for months as their main source of water for their homes. These temporary connections, according to neighbors and a city spokesperson, were installed as a remedy for a main waterline that broke in August 2024.  After previously notifying the residents, the city removed its fire hose connections last Wednesday — mainly due to safety concerns regarding the rest of the city’s water supply — leaving those six homes and residents without water. … And what was more surprising to … residents who live in that neighborhood was the city informing them it will not be fixing their waterline, leaving many scrambling to figure out how or if they should pay for those repairs.

Related article:

  • East Bay Times (Walnut Creek, Calif.): Unincorporated Pleasanton residents relying on hose water after line breaks
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Aquafornia news May 2, 2025 Los Angeles Times

Friday Top of the Scroll: U.S. House votes to take California fish off endangered species list

House Republicans passed a measure Thursday that would repeal the government’s decision to place California’s longfin smelt, a finger-sized fish, on the endangered species list. House members passed the resolution, introduced by California Rep. Doug LaMalfa (R-Richvale), in a 216-195 vote that followed party lines. The resolution now goes to the Republican-controlled Senate. “We want to block the U.S. Fish and Wildlife Service’s misguided decision to list the San Francisco Bay Delta population of the longfin smelt as being endangered,” LaMalfa, who represents a rice-growing region in Northern California, said before the vote. He said the agency’s decision last year to declare the fish species endangered was “unscientific” and said it’s making it harder to deliver water from the Sacramento-San Joaquin River Delta to farmers.

Other ESA news:

  • The San Joaquin Valley Sun: House OKs repealing endangered listing for longfin Delta smelt
  • Congressman David Valadao: News release: Congressman Valadao applauds passage of resolution to repeal longfin smelt ESA listing
  • Best Best & Krieger: Blog: Federal wildlife agencies propose rescinding definition of “harm” under Endangered Species Act
  • Read more
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Aquafornia news May 1, 2025 San Francisco Chronicle

House Republicans want to remove endangered species protection for a tiny fish in San Francisco Bay

Congress is expected to vote Thursday on a Republican resolution to reverse endangered species protection for a tiny inhabitant of San Francisco Bay that opponents say could set a dangerous precedent. The resolution aims to remove the endangered species status of longfin smelt in the San Francisco Bay. The fish received that designation in July under the Biden administration. Rep. Doug LaMalfa, a Republican from Butte County, introduced the resolution in March under the Congressional Review Act, saying it was necessary to protect the state’s water supply. Opponents say the time period for such a resolution already expired and that the Republican effort is part of an unprecedented attack on endangered species protections.

Other federal environmental law news:

  • E&E News by Politico: Senate panel OKs weather modeling, fisheries bills 
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Aquafornia news April 10, 2024 Western Outdoor News

California Department of Fish and Wildlife recommends 2024 ocean salmon closure

The California Department of Fish and Wildlife recommended Alternative 3 – Salmon Closure during the final days of the Pacific Fisheries Management Council (PFMC) meeting mirroring the opinions of commercial and recreational charter boat anglers. The department’s position is a significant change from early March. The PFMC meetings are being held in Seattle from April 6 to 11, and the final recommendations of the council will be forwarded to the California Fish and Game Commission in May.

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Western Water July 25, 2019 California Water Map Gary Pitzer

A Study of Microplastics in San Francisco Bay Could Help Cleanup Strategies Elsewhere
WESTERN WATER NOTEBOOK: Debris from plastics and tires is showing up in Bay waters; state drafting microplastics plan for drinking water

Plastic trash and microplastics can get washed into stormwater systems that eventually empty into waterways. Blasted by sun and beaten by waves, plastic bottles and bags shed fibers and tiny flecks of microplastic debris that litter the San Francisco Bay where they can choke the marine life that inadvertently consumes it.

A collaborative effort of the San Francisco Estuary Institute, The 5 Gyre Institute, San Francisco Bay Regional Water Quality Control Board and the regulated discharger community that aims to better understand the problem and assess how to manage it in the San Francisco Bay is nearing the end of a three-year study.

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Aquapedia background August 7, 2017 Layperson's Guide to the Delta

Estuary

Suisun Marsh, part of the San Francisco Bay-Delta estuary, is the largest contiguous brackish water marsh on the West Coast of North America.Estuaries are places where fresh and salt water mix, usually at the point where a river enters the ocean. They are the meeting point between riverine environments and the sea, with a combination of tides, waves, salinity, fresh water flow and sediment. The constant churning means there are elevated levels of nutrients, making estuaries highly productive natural habitats.

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Western Water November 16, 2016 Gary Pitzer

Delta Report Highlights Need to Restore Legacy Processes

Understanding the importance of the Bay-Delta ecosystem and working to restore it means grasping the scope of what it once was.

That’s the takeaway message of a report released Nov. 14 by the San Francisco Estuary Institute.

The report, “A Delta Renewed,” is the latest in a series sponsored by the California Department of Fish and Wildlife (DFW). Written by several authors, the report says there is “cause for hope” to achieving large-scale Delta restoration in a way that supports people, farms and the environment. SFEI calls itself “one of California’s premier aquatic and ecosystem science institutes.”

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Aquapedia background September 8, 2016

Zooplankton

Examples of zooplanktonZooplankton, which are floating aquatic microorganisms too small and weak to swim against currents, are are important food sources for many fish species in the Delta such as salmon, sturgeon and Delta smelt.

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Tour June 24, 2015 - June 26, 2015 Go Deep into California's Water Hub Images from the Bay-Delta tour

Bay-Delta Tour 2015
Field Trip (past)

This 3-day, 2-night tour, which we do every year, takes participants to the heart of California water policy – the Sacramento-San Joaquin Delta and San Francisco Bay.

  • California Water Fix- Heiland
  • Climate Change and CA Water- Chappell
  • EBMUD Bay Delta Nexus- Bray
  • Delta Fish Ecology- Herbold
  • Delta Water Flow - Peltier
  • SDWA - John Herrick
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Aquapedia background February 11, 2014 California Water Map Layperson's Guide to California Water

Pacific Flyway

Sacramento National Wildlife RefugeThe Pacific Flyway is one of four major North American migration routes for birds, especially waterbirds, and stretches from Alaska in the north to Patagonia in South America.

Each year, birds follow ancestral patterns as they travel the flyway on their annual north-south migration. Along the way, they need stopover sites such as wetlands with suitable habitat and food supplies. In California, 95 percent of historic wetlands have been lost, yet the Central Valley hosts some of the world’s largest populations of wintering birds. 

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Tour June 18, 2014 Images from the Bay-Delta tour

Bay-Delta Tour 2014
Field Trip (past)

The 2014 tour took place June 18 – 20.

This 3-day, 2-night tour takes participants to the heart of California water policy – the Sacramento-San Joaquin Delta and San Francisco Bay.

  • Keith Coolidge, Delta Stewardship Council: Delta Overview
  • Bryan Brock, DWR: Subsidence Mitigation
  • Bryan Brock, DWR: Sustainable Delta Farming
  • CCWD: Historical Freshwater and Salinity Conditions
  • CCWD: Protecting Delta Fisheries
  • CCWD: Canal Replacement Project
  • CCWD: Bay-Delta Tour Map
  • Erin Chappell, DWR: Climate Change Impacts Bay-Delta Region
  • Bruce Herbold
  • Jason Peltier
  • Caitrin Chapelle, PPIC: Stress Relief: Prescriptions for a Healthier Delta Ecosystem
  • John Herrick, South Delta Water Agency: BDCP: A Plan to Lose the Delta
  • Jacob McQuirk, DWR: Delta Water Conveyance
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Video May 27, 2014

A Climate of Change: Water Adaptation Strategies

This 25-minute documentary-style DVD, developed in partnership with the California Department of Water Resources, provides an excellent overview of climate change and how it is already affecting California. The DVD also explains what scientists anticipate in the future related to sea level rise and precipitation/runoff changes and explores the efforts that are underway to plan and adapt to climate.

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Video May 22, 2014

Delta Warning

15-minute DVD that graphically portrays the potential disaster should a major earthquake hit the Sacramento-San Joaquin Delta. “Delta Warning” depicts what would happen in the event of an earthquake registering 6.5 on the Richter scale: 30 levee breaks, 16 flooded islands and a 300 billion gallon intrusion of salt water from the Bay – the “big gulp” – which would shut down the State Water Project and Central Valley Project pumping plants.

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Video May 21, 2014

Water on the Edge (60-minute DVD)

Water truly has shaped California into the great state it is today. And if it is water that made California great, it’s the fight over – and with – water that also makes it so critically important. In efforts to remap California’s circulatory system, there have been some critical events that had a profound impact on California’s water history. These turning points not only forced a re-evaluation of water, but continue to impact the lives of every Californian. This 2005 PBS documentary offers a historical and current look at the major water issues that shaped the state we know today. Includes a 12-page viewer’s guide with background information, historic timeline and a teacher’s lesson.

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Maps & Posters May 20, 2014

Water Cycle Poster

Water as a renewable resource is depicted in this 18×24 inch poster. Water is renewed again and again by the natural hydrologic cycle where water evaporates, transpires from plants, rises to form clouds, and returns to the earth as precipitation. Excellent for elementary school classroom use.

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Maps & Posters May 20, 2014

Invasive Species Poster Set

One copy of the Space Invaders and one copy of the Unwelcome Visitors poster for a special price.

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Maps & Posters May 20, 2014

Unwelcome Visitors

This 24×36 inch poster, suitable for framing, explains how non-native invasive animals can alter the natural ecosystem, leading to the demise of native animals. “Unwelcome Visitors” features photos and information on four such species – including the zerbra mussel – and explains the environmental and economic threats posed by these species.

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Maps & Posters May 20, 2014

Space Invaders

This 24×36 inch poster, suitable for framing, explains how non-native invasive plants can alter the natural ecosystem, leading to the demise of native plants and animals. “Space Invaders” features photos and information on six non-native plants that have caused widespread problems in the Bay-Delta Estuary and elsewhere.

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Publication April 17, 2014 Sacramento-San Joaquin Delta Map

Layperson’s Guide to the Delta
Updated 2020

The 24-page Layperson’s Guide to the Delta explores the competing uses and demands on California’s Sacramento-San Joaquin Delta. Included in the guide are sections on the history of the Delta, its role in the state’s water system, and its many complex issues with sections on water quality, levees, salinity and agricultural drainage, fish and wildlife, and water distribution.

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Maps & Posters April 17, 2014 California Water Bundle

California Water Map
Updated December 2016

A new look for our most popular product! And it’s the perfect gift for the water wonk in your life.

Our 24×36-inch California Water Map is widely known for being the definitive poster that shows the integral role water plays in the state. On this updated version, it is easier to see California’s natural waterways and man-made reservoirs and aqueducts – including federally, state and locally funded projects – the wild and scenic rivers system, and natural lakes. The map features beautiful photos of California’s natural environment, rivers, water projects, wildlife, and urban and agricultural uses and the text focuses on key issues: water supply, water use, water projects, the Delta, wild and scenic rivers and the Colorado River.

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Aquapedia background February 11, 2014 Sacramento-San Joaquin Delta Map Layperson's Guide to the Delta

Bay Model

Bay-Delta Tour participants viewing the Bay Model

Operated by the U.S. Army Corps of Engineers, the Bay Model is a giant hydraulic replica of San Francisco Bay and the Sacramento-San Joaquin Delta. It is housed in a converted World II-era warehouse in Sausalito near San Francisco.

Hundreds of gallons of water are pumped through the three-dimensional, 1.5-acre model to simulate a tidal ebb and flow lasting 14 minutes.

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Aquapedia background February 11, 2014

San Francisco Bay

San Francisco Bay and the inter-connected Sacramento-San Joaquin Delta form the largest estuary on the Pacific West Coast.

The estuary is shaped by water flows from two directions.

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Aquapedia background February 10, 2014 Sacramento-San Joaquin Delta Map Layperson's Guide to the Delta

Invasive Species

Invasive water hyacinth surrounds docks and boats in the Sacramento-San Joaquin Delta. Invasive species, also known as exotics, are plants, animals, insects and aquatic species introduced into non-native habitats.

Often, invasive species travel to non-native areas by ship, either in ballast water released into harbors or attached to the sides of boats. From there, introduced species can then spread and significantly alter ecosystems and the natural food chain as they go. Another example of non-native species introduction is the dumping of aquarium fish into waterways.

  • Read more
Western Water Magazine May 1, 2013

Meeting the Co-equal Goals? The Bay Delta Conservation Plan
May/June 2013

This issue of Western Water looks at the BDCP and the Coalition to Support Delta Projects, issues that are aimed at improving the health and safety of the Delta while solidifying California’s long-term water supply reliability.

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Western Water Magazine March 1, 2009

Delta Conveyance: The Debate Continues
March/April 2009

This printed issue of Western Water provides an overview of the idea of a dual conveyance facility, including questions surrounding its cost, operation and governance

  • Read more
Western Water Magazine March 1, 2008

Finding a Vision for the Delta
March/April 2008

This printed copy of Western Water examines the Delta through the many ongoing activities focusing on it, most notably the Delta Vision process. Many hours of testimony, research, legal proceedings, public hearings and discussion have occurred and will continue as the state seeks the ultimate solution to the problems tied to the Delta.

  • Read more

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